MmuEX7000843 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30337224-30339908:+
Coord C1 exon
chr2:30337224-30337405
Coord A exon
chr2:30339499-30339699
Coord C2 exon
chr2:30339816-30339908
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTGACTGCCAGCAGGTG
3' ss Score
6.92
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TCGGTGATATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACTCTCCAAGAAGAGGTGATTGCACTCTTTGATCAGACCCGCCACAGCCTGGCATCCGACAGCGCTGCCGAGGACAAGGACAGCATGGAGACAGATGACTGCCCTCGGCCCCGGCACAAGGACCAGCGTGATGGG
Seq A exon
GTGTGTGTCCTGGGACTGCATCTGGCTAAGGAGCTCTGTGAGGTGGATGAGGATGGGGACTCATGGTTGCAGGTGACCCGAAGGCTCCCCATTCTGCCCACGCTGCTCACCACGCTGGAGGTGAGCCTCCGCATGAAGCAGAACCTGCATTTTACTGAGGCTGCGCTGCACCTGCTCCTCACCCTGGCTCGAACCCAGCAA
Seq C2 exon
GGAGCCACAGCAGTGGCTGGAGCTGGCATCACCCAGAGCATCTGTTTGCCCCTCTTGAGTGTATACCAGCTTAGCAGCAATGGCACAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'53-69,'53-64,62-69=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATATCCCCCAGTACTCCC
R:
TCCTGTGCCATTGCTGCTAAG
Band lengths:
270-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types