RnoEX0061644 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8902457-8904944:+
Coord C1 exon
chr3:8902457-8902638
Coord A exon
chr3:8904526-8904726
Coord C2 exon
chr3:8904852-8904944
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTTGCCCTGACTACCAGCAGGTA
3' ss Score
4.67
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TAAGCGAAATCCCCCAGTACTCCCAGCTGGTGCTGAATGTCTGCGAGACCCTCCAGGAAGAGGTGATTGCACTCTTTGACCAGACCCGCCACAGCCTGGCATCAGGCAGTGCTGCCGAAGACAAAGACAGCATGGAAACAGATGACTGCCCTCGGCCCCGGCACAAGGACCAGCGTGACGGG
Seq A exon
GTATGTGTCCTGGGACTGCATCTGGCAAAGGAGCTCTGTGAGGTGGATGAGGATGGGGACTCGTGGCTGCAGGTGACCCGAAGGCTCCCCATTCTGCCCACGCTGCTCACCACCCTGGAGGTGAGCCTCCGCATGAAGCAGAACCTGCATTTTACTGAGGCTGCGCTGCACCTGCTCCTCACCCTGGCTCGCACCCAGCAG
Seq C2 exon
GGAGCCACAGCAGTGGCTGGAGCTGGCATCACGCAGAGCATCTGCTTGCCCCTCTTGAGTGTATACCAGCTGAGCAGCAATGGCACAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185-'44-50,'44-49,48-50
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATCCCCCAGTACTCCCA
R:
GTCCTGTGCCATTGCTGCTC
Band lengths:
269-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]