GgaEX0006129 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5424499-5425985:+
Coord C1 exon
chr17:5424499-5424680
Coord A exon
chr17:5425017-5425217
Coord C2 exon
chr17:5425893-5425985
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTTCTCCCTTCCAGGTT
3' ss Score
13.69
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGAATGAGATCCCTCAGTACTCCCAGCTGGTGCTGAGTGTGTGTGAAACTCTCCAGGATGAGGTCATTGCACTCTTTGATCAGACTCGACATAGCCTGACCTTGGGGGATGCCACAGATGACAAGGACAGCATGGAAACAGATGATGCCTCCCGAGTTAAACACAAGGACCAGCGAGATGGG
Seq A exon
GTTTGTGTTTTGGGTCTGCATCTCGCAAAAGAGCTCTGTGAAGTTGATGATGATGGAGACTACTGGCTGCAGATTACTAGGAAAGTCCCTGTGCTTCCTACCATCTTTACTGCTTTGGAGATCAGCCTGAGAGTTAAACAAAACCTTCACTTCACAGAGGCCTCGTTACATCTGCTGCTGACCTTAGCAAGGACGCAGCAG
Seq C2 exon
GGAGCAGCAGCAGTGGCTGGGGCTGGTGTCTCACAGAGTGTCTGCCTGCCCCTCCTGAGCGTGTACCAGCTCAGCACTAATGGAGCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCTCAGTACTCCCAGC
R:
TGAATGGCTCCATTAGTGCTGA
Band lengths:
268-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]