DreEX6083953 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18032729-18049478:-
Coord C1 exon
chr21:18049410-18049478
Coord A exon
chr21:18032890-18032995
Coord C2 exon
chr21:18032729-18032743
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTTTTCTTGCGCAGTGA
3' ss Score
9.59
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCCTTTTCCATCAGAGGACACTGCACTGAATGAAGATGATGTGTACCGGAGCTTGGAGGAGCTGGCAGA
Seq A exon
TGAGCATGATGTGGGAGAGGACGACATCTATGACTGCGTCCCCTGCGAGGATGATGGGGACGACATCTACGAGGACATCATCAAGGTGGAGGTTAGACAGCCTATG
Seq C2 exon
ATCAGATACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-'4-9,'4-8,5-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]