MmuEX6099866 @ mm10
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27299374-27318996:-
Coord C1 exon
chr2:27318928-27318996
Coord A exon
chr2:27302008-27302110
Coord C2 exon
chr2:27299374-27299472
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACCCACCTCTCCCTTTGCAGCGA
3' ss Score
11.56
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCATTTCCATCAGAGGAGACAGCTGAAAATGATGACGACGTCTACCGGAGCCTGGAAGAGCTGGCTGA
Seq A exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq C2 exon
AAAATGGGCATGACTGAGGACGACAAGAGAAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'31-13,'31-11,33-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(10.1=33.3)
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAGAGGAGACAGCTGA
R:
CTTCTCAATGTCCTCCAGGGTG
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types