GgaEX6015355 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7069560-7076232:-
Coord C1 exon
chr17:7076164-7076232
Coord A exon
chr17:7071275-7071377
Coord C2 exon
chr17:7069560-7069658
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTTCTCATTGCAGTGA
3' ss Score
10.17
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GCCATTCCCTTCAGAGGAGACCACAGAGAATGATGACGATGTGTACCGGAGCCTGGAGGAGTTGGCTGA
Seq A exon
TGAGCACGATCTGGGGGAGGATATTTATGACTGCGTCCCCTGTGAAGATGAAGGCGATGATATCTACGAAGATATCATCCGGGTGGAAGTTCAGCAGCCCATG
Seq C2 exon
AAAATGGGCATGACAGAAGATGACAAAAGGAATTGCTGTTTGCTAGAAATCCAGGAGACGGAGGCCAAATACTACAAAACACTTGAAGACATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-'16-14,'16-10,20-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.518 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Skipping Isoform:
ENSGALT00000004255fB13606
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGAGGAGACCACAGA
R:
CTTCTCTATGTCTTCAAGTGTTTTGT
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]