DmeEX0006975 @ dm6
Exon Skipping
Gene
FBgn0040068 | Vav
Description
The gene Vav guanine nucleotide exchange factor is referred to in FlyBase by the symbol DmelVav (CG7893, FBgn0040068). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is X:19261820..19273280. Its molecular function is described by: Ras guanyl-nucleotide exchange factor activity; Rac guanyl-nucleotide exchange factor activity. It is involved in the biological process described with 20 unique terms, many of which group under: embryo development ending in birth or egg hatching; regulation of adherens junction organization; epithelial cell migration; protein phosphorylation; positive regulation of catalytic activity. 17 alleles are reported. The phenotypes of these alleles manifest in: eye-antennal disc; embryonic/larval dorsal branch; midline crossing tract; longitudinal connective; dorsal closure embryo. The phenotypic classes of alleles include: increased mortality during development; some die during pupal stage; phenotype; immune response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:19263881-19269651:+
Coord C1 exon
chrX:19263881-19263955
Coord A exon
chrX:19269257-19269365
Coord C2 exon
chrX:19269484-19269651
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCGTTTTCGTTTAGTAC
3' ss Score
6.37
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACGAGGCCATCTACAAGGACCTGCATTCCAC
Seq A exon
TACCACCGACAATATTGCATGCAATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCAAGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAG
Seq C2 exon
ACCGCCTCGTCGACGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAGTCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCCGCTGGAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0040068_MULTIEX1-4/5=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(24.4=76.8)
Main Inclusion Isoform:
FBpp0074448

Main Skipping Isoform:
FBpp0305901

Other Inclusion Isoforms:
FBpp0074449, FBpp0112228
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCAACCTACAGCTTTCG
R:
CTGATGCGCGGGAATATGAGA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)