RnoEX6038487 @ rn6
Exon Skipping
Gene
ENSRNOG00000050430 | Vav1
Description
vav guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:3951]
Coordinates
chr9:9645155-9645796:-
Coord C1 exon
chr9:9645728-9645796
Coord A exon
chr9:9645339-9645447
Coord C2 exon
chr9:9645155-9645250
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCCTGAATCTGTCCCTCAGTGA
3' ss Score
5.77
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GCCCTTCCCAACAGAGGACAGCGCCCTGGGTGATGAAGATATTTACAGTGGCCTTTCAGACCAGATTGA
Seq A exon
TGACACCGCAGAGGAAGATGAGGACCTTTATGACTGCGTGGAGAATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTCGGAGTCGGTGCCCACACCT
Seq C2 exon
CCCAAGATGACAGAGTACGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACTGAGGAGAAGTACACAGACACACTGGGCTCCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050430-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.486 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCCCAACAGAGGACAG
R:
CTGGATGGAGCCCAGTGTGTC
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]