MmuEX6078789 @ mm10
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57296700-57297341:+
Coord C1 exon
chr17:57296700-57296768
Coord A exon
chr17:57297049-57297157
Coord C2 exon
chr17:57297246-57297341
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCCTGAATCTGTCCCCTAGTGA
3' ss Score
5.86
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCCCTTCCCAACAGAGGACAGCGCTCTGAACGACGAAGATATTTACAGTGGCCTTTCAGACCAGATTGA
Seq A exon
TGACACCGCAGAGGAAGACGAGGACCTTTATGACTGCGTGGAAAATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTTGGAGTCGGTGCCTACGCCA
Seq C2 exon
CCCAAGATGACAGAGTATGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACAGACACACTGGGCTCCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'2-17,'2-8,10-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.324 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCCCAACAGAGGACAG
R:
CTGGATGGAGCCCAGTGTGTC
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types