DreEX6026182 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16434690-16440340:-
Coord C1 exon
chr2:16440275-16440340
Coord A exon
chr2:16437845-16437947
Coord C2 exon
chr2:16434690-16434782
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGAGCAGCGA
3' ss Score
5.54
5' ss Seq
GCGGTACAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
GTCGTTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATACATCCATTTGGCAGATCTCATCGA
Seq A exon
CGAGGAGCTGGAAGAAGATGTTTATGACCCTGTGTATGGAGACATTGAAGGAGGAGAGGTGTATGAGGACCTGATGAGGACTGAAGCTGCTGTGTCTCAAGCG
Seq C2 exon
AAACAGGCCGAGGTGGACATCAGAAGCTGCTGTCTTTTAGAGATCAAACAGACAGAAGCCAAATACACAGAGACTCTAGAGACCATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTCCCACAGAGGAAAGC
R:
TCAATGGTCTCTAGAGTCTCTGTGT
Band lengths:
154-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]