BtaEX6016224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35627549-35636362:+
Coord C1 exon
chr3:35627549-35627614
Coord A exon
chr3:35633016-35633124
Coord C2 exon
chr3:35636270-35636362
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTTGTACCCTTTGTTTCAGTGA
3' ss Score
8.09
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
GCCCTTCCCGACAGAAGAAAGCATTAATGATGATGACATCTACAAAGGCCTGCCCGATTTAATAGA
Seq A exon
TGAAACCCACGTGGAAGATGAAGACGGTCTGTACGACTGTGTATATGGGGAGGATGAAGGTGGCGAGGTGTATGAGGACCTGATGAAGGCGGAGGAAGCACAGCAGTCG
Seq C2 exon
AAATGTCCAGAAAATGATATACGAAGTTGCTGCCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACACTGGAGTCAATAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCCGACAGAAGAAAGC
R:
TCTATTGACTCCAGTGTTTCTGT
Band lengths:
154-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]