GgaEX1063001 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1081872-1086269:-
Coord C1 exon
chr8:1086204-1086269
Coord A exon
chr8:1084421-1084529
Coord C2 exon
chr8:1081872-1081964
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTCCTTTTTAGTGA
3' ss Score
11.44
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GCCCTTCCCCACAGAAGAAAGTGTTGATGATGAAGATGTCTACAAATGTCTTCCTGATTTGATAGA
Seq A exon
TGAAACTGGTGTTGATGAAGATGAGGAGCTGTATGATTGTGTCTATGGAGAAGATGAAGGTGGGGAGGTTTATGAAGACCTAATGAAAGATGAAGCAGCACAGCAACCT
Seq C2 exon
AAACATACTGAAAATGATGTAAGAAGTTGTTGTCTTGCTGAAATAAAACAAACTGAAGAGAAATACACTGAAACTCTGGAATCAATAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'3-8,'3-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCCCCACAGAAGAAAG
R:
TCTATTGATTCCAGAGTTTCAGTGT
Band lengths:
155-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]