GgaEX1063001 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:987129-1107865:-
Coord C1 exon
chr8:1107739-1107865
Coord A exon
chr8:1078810-1078918
Coord C2 exon
chr8:987129-989393
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTCCTTTTTAGTGA
3' ss Score
11.44
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
TTTCCCTTAGTTTCTCTGCTTGAAGAACATAAGGACTTTTCTTTCGGCATGTTGTGAAATATTTGGGATGAAGAAAAGTGAACTTTTTGAAGCATTCGATTTGTTTGATGTGAGAGACTTCGGAAAG
Seq A exon
TGAAACTGGTGTTGATGAAGATGAGGAGCTGTATGATTGTGTCTATGGAGAAGATGAAGGTGGGGAGGTTTATGAAGACCTAATGAAAGATGAAGCAGCACAGCAACCT
Seq C2 exon
GTGGGCTGGTTTCCATCTACTTATGTTGAAGAAGATGAATGAATTAAAAACTTTTCTCTGCTGACCAGCAATTTCAGGGATTGTAGAATTTAATAACTTCAAGCATTAATGGTCTTGTTAAGTACTTAGGCAGCAGCATTTTCTGTCTGAACCTTCTAGTCTTATTGTTGGGATTTATAAAGAACTTTGTACTAGCAGATTATTACCTTGCCCAGAGCTGTGCAAGAAACAACCTGCCACTTTGCTGTCACTGGGGATCAGTACAAAGTCTGGCGCTCACCTTTCCAGAAGATTTCAGGAAAACAAATTTCTTTATTCTTTTTCATTTTTTCACACTGTACTACACCATGAATAGTAGCTATGGCTGAATGTTTAATAAGTCTGTTTTCTTCTAGCTAACATCTGTGATGGTACGAGGAGATGAAGGCTTATTATTCCTTATCACTGCATGCAGAAAGCGTAGTTCAGTCATTCAGGTGGGCATAAACTGTAGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-3/26=C1-26
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(75.6=87.2)
A:
NO
C2:
PF0765312=SH3_2=PD(20.4=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTTCTTTCGGCATGTTGT
R:
AGACAGAAAATGCTGCTGCCT
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]