RnoEX0097890 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212398610-212405438:+
Coord C1 exon
chr2:212398610-212398675
Coord A exon
chr2:212403367-212403475
Coord C2 exon
chr2:212405346-212405438
Length
109 bp
Sequences
Splice sites
3' ss Seq
TACCGCGTTCCTTGTTTCAGTGA
3' ss Score
8.81
5' ss Seq
GCTGTAGGG
5' ss Score
-1.34
Exon sequences
Seq C1 exon
GCCATTCCCCACGGAAGAAAGTGTAAATGATGAAGACATCTACAAAGGCCTTCCTGACCTGATAGA
Seq A exon
TGAAACCCGTGTGGAGGACGAAGAAGACCTCTATGACTGTGTGTACGGGGAGGATGAAGGCGGAGAAGTCTATGAAGATTTGATGAAGGCGGAGGAGGCTCACCAAGCT
Seq C2 exon
AAATCACAAGAAAATGATATACGGAGTTGTTGCCTAGCAGAAATTAGGCAGACAGAAGAAAAATACACAGAAACTTTGGAGTCAATAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'7-6,'7-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF143061=PUA_2=PU(26.7=54.1)
C2:
PF143061=PUA_2=FE(40.0=100),PF0062115=RhoGEF=PU(17.4=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCACGGAAGAAAGTGTA
R:
TTTTCTATTGACTCCAAAGTTTCTGT
Band lengths:
154-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]