HsaEX6032474 @ hg38
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107770636-107777296:-
Coord C1 exon
chr1:107777231-107777296
Coord A exon
chr1:107772735-107772843
Coord C2 exon
chr1:107770636-107770728
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATGATATCCTTTGTTGTAGTGA
3' ss Score
6.21
5' ss Seq
CCCGTAGGA
5' ss Score
1.02
Exon sequences
Seq C1 exon
GCCCTTCCCAACAGAAGAAAGCATTAATGATGAAGACATCTACAAAGGCCTTCCTGATTTAATAGA
Seq A exon
TGAAACCCTTGTGGAAGATGAAGAAGATCTCTATGACTGTGTTTATGGGGAAGATGAAGGTGGAGAAGTCTATGAGGACTTAATGAAGGCAGAGGAAGCACATCAGCCC
Seq C2 exon
AAATGTCCAGAAAATGATATACGAAGTTGTTGTCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACTTTGGAGTCAATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-'25-18,'25-16,28-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCCAACAGAAGAAAGCA
R:
TTTTCTATTGACTCCAAAGTTTCTGT
Band lengths:
157-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains