MmuEX6073520 @ mm9
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109299806-109306420:+
Coord C1 exon
chr3:109299806-109299871
Coord A exon
chr3:109304296-109304404
Coord C2 exon
chr3:109306328-109306420
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTGCATTCCTTGTTTCAGTGA
3' ss Score
8.13
5' ss Seq
CCTGTAGGG
5' ss Score
-0.51
Exon sequences
Seq C1 exon
GCCGTTCCCCACTGAAGAAAGTATAAATGATGAAGACATCTACAAAGGCCTTCCCGACTTAATAGA
Seq A exon
TGAAACCCGCGTGGAAGATGAAGAAGACCTCTATGACTGTGTGTACGGCGAGGATGAAGGCGGAGAAGTCTATGAAGACTTGATGAAGGCGGAGGAAGCCCAGCAACCT
Seq C2 exon
AAATCACAAGAAAATGATATACGGAGTTGTTGCCTAGCAGAAATTAGGCAGACAGAAGAAAAATACACAGAAACGTTGGAGTCAATAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTCCCCACTGAAGAAAG
R:
TCTATTGACTCCAACGTTTCTGTGT
Band lengths:
155-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: