DreEX6095610 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29638279-29647640:-
Coord C1 exon
chr24:29647575-29647640
Coord A exon
chr24:29639363-29639471
Coord C2 exon
chr24:29638279-29638371
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTTGTGTGTTTCAGTGA
3' ss Score
9.08
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCGTTTCCCACAGAAGAGAGTGTTGAGGATGAAGACATTTATAACCATCTTGAGGATCTGATAGA
Seq A exon
TGAGAACGGTGTTGAAGATGAGGAGGATCTCTATGACTGTGTGTACGACGATGATGAAGGTGGTGAGGTGTATGAAGACCTGATGAAGGTCGAGTTGGTTCAGCCACAG
Seq C2 exon
AAACAGGCAGAGACGGACATCAGGAGCTGCTGTCTGATGGAGATCAAGCAAACTGAGGAGAAATACACTGAGACACTGGACTCTATAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'5-11,'5-10,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.081 C2=0.048
Domain overlap (PFAM):
C1:
PF060426=DUF925=PU(7.8=43.5)
A:
PF060426=DUF925=FE(28.1=100)
C2:
PF060426=DUF925=FE(23.4=100),PF0219410=PXA=PU(20.6=83.9),PF0062115=RhoGEF=PU(13.8=64.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTTCCCACAGAAGAGAG
R:
TCTATAGAGTCCAGTGTCTCAGTGT
Band lengths:
155-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]