DreEX0009333 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29635168-29639471:-
Coord C1 exon
chr24:29639363-29639471
Coord A exon
chr24:29638279-29638371
Coord C2 exon
chr24:29635168-29635236
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTGTTGTGATCACAGAAA
3' ss Score
4.7
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
TGAGAACGGTGTTGAAGATGAGGAGGATCTCTATGACTGTGTGTACGACGATGATGAAGGTGGTGAGGTGTATGAAGACCTGATGAAGGTCGAGTTGGTTCAGCCACAG
Seq A exon
AAACAGGCAGAGACGGACATCAGGAGCTGCTGTCTGATGGAGATCAAGCAAACTGAGGAGAAATACACTGAGACACTGGACTCTATAGAGAAA
Seq C2 exon
TTCTTTATGAAGCCTCTGGGACAGTCGCTGTCCAGCGTGGAGATCGAAAAAGTGTTCATCAACATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'8-14,'8-11,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF060426=DUF925=FE(28.1=100)
A:
PF060426=DUF925=FE(23.4=100),PF0219410=PXA=PU(20.6=83.9),PF0062115=RhoGEF=PU(13.8=64.5)
C2:
PF060426=DUF925=FE(17.2=100),PF0219410=PXA=FE(17.5=100),PF0062115=RhoGEF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACGGTGTTGAAGATGAGG
R:
TGAACACTTTTTCGATCTCCACG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]