BtaEX6016223 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35633016-35638490:+
Coord C1 exon
chr3:35633016-35633124
Coord A exon
chr3:35636270-35636362
Coord C2 exon
chr3:35638422-35638490
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTGAAAATTCTAATTGTAGAAA
3' ss Score
4.63
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGAAACCCACGTGGAAGATGAAGACGGTCTGTACGACTGTGTATATGGGGAGGATGAAGGTGGCGAGGTGTATGAGGACCTGATGAAGGCGGAGGAAGCACAGCAGTCG
Seq A exon
AAATGTCCAGAAAATGATATACGAAGTTGCTGCCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACACTGGAGTCAATAGAAAAA
Seq C2 exon
TATTTCATGGCACCATTGAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=64.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCCACGTGGAAGATGA
R:
TGAATACTGAATCAAATTCTGCTGCT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]