MmuEX6073519 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109501378-109506464:+
Coord C1 exon
chr3:109501378-109501486
Coord A exon
chr3:109503410-109503502
Coord C2 exon
chr3:109506396-109506464
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTACCTTTCTGTCTGCAGAAA
3' ss Score
11.2
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGAAACCCGCGTGGAAGATGAAGAAGACCTCTATGACTGTGTGTACGGCGAGGATGAAGGCGGAGAAGTCTATGAAGACTTGATGAAGGCGGAGGAAGCCCAGCAACCT
Seq A exon
AAATCACAAGAAAATGATATACGGAGTTGTTGCCTAGCAGAAATTAGGCAGACAGAAGAAAAATACACAGAAACGTTGGAGTCAATAGAAAAA
Seq C2 exon
TATTTCATGGCACCATTGAAAAGATTTCTGACGGCGGCGGAATTTGATTCAGTATTTATTAACATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'3-22,'3-15,11-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=64.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCGCGTGGAAGATGAA
R:
ATAAATACTGAATCAAATTCCGCCGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types