GgaEX1063002 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:987129-1107865:-
Coord C1 exon
chr8:1107739-1107865
Coord A exon
chr8:1076261-1076353
Coord C2 exon
chr8:987129-989393
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCATTGTAATTTCAGAAA
3' ss Score
5.5
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTTCCCTTAGTTTCTCTGCTTGAAGAACATAAGGACTTTTCTTTCGGCATGTTGTGAAATATTTGGGATGAAGAAAAGTGAACTTTTTGAAGCATTCGATTTGTTTGATGTGAGAGACTTCGGAAAG
Seq A exon
AAACATACTGAAAATGATGTAAGAAGTTGTTGTCTTGCTGAAATAAAACAAACTGAAGAGAAATACACTGAAACTCTGGAATCAATAGAGAAA
Seq C2 exon
GTGGGCTGGTTTCCATCTACTTATGTTGAAGAAGATGAATGAATTAAAAACTTTTCTCTGCTGACCAGCAATTTCAGGGATTGTAGAATTTAATAACTTCAAGCATTAATGGTCTTGTTAAGTACTTAGGCAGCAGCATTTTCTGTCTGAACCTTCTAGTCTTATTGTTGGGATTTATAAAGAACTTTGTACTAGCAGATTATTACCTTGCCCAGAGCTGTGCAAGAAACAACCTGCCACTTTGCTGTCACTGGGGATCAGTACAAAGTCTGGCGCTCACCTTTCCAGAAGATTTCAGGAAAACAAATTTCTTTATTCTTTTTCATTTTTTCACACTGTACTACACCATGAATAGTAGCTATGGCTGAATGTTTAATAAGTCTGTTTTCTTCTAGCTAACATCTGTGATGGTACGAGGAGATGAAGGCTTATTATTCCTTATCACTGCATGCAGAAAGCGTAGTTCAGTCATTCAGGTGGGCATAAACTGTAGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-4/26=C1-26
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(75.6=87.2)
A:
PF0062115=RhoGEF=PU(11.4=64.5)
C2:
PF0765312=SH3_2=PD(20.4=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGATGTGAGAGACTTCGGA
R:
AGACAGAAAATGCTGCTGCCT
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]