DmeEX0006976 @ dm6
Exon Skipping
Gene
FBgn0040068 | Vav
Description
The gene Vav guanine nucleotide exchange factor is referred to in FlyBase by the symbol DmelVav (CG7893, FBgn0040068). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is X:19261820..19273280. Its molecular function is described by: Ras guanyl-nucleotide exchange factor activity; Rac guanyl-nucleotide exchange factor activity. It is involved in the biological process described with 20 unique terms, many of which group under: embryo development ending in birth or egg hatching; regulation of adherens junction organization; epithelial cell migration; protein phosphorylation; positive regulation of catalytic activity. 17 alleles are reported. The phenotypes of these alleles manifest in: eye-antennal disc; embryonic/larval dorsal branch; midline crossing tract; longitudinal connective; dorsal closure embryo. The phenotypic classes of alleles include: increased mortality during development; some die during pupal stage; phenotype; immune response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:19269257-19270550:+
Coord C1 exon
chrX:19269257-19269365
Coord A exon
chrX:19269484-19269651
Coord C2 exon
chrX:19269721-19270550
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCCTTCCCCTCTAGACC
3' ss Score
12
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TACCACCGACAATATTGCATGCAATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCAAGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAG
Seq A exon
ACCGCCTCGTCGACGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAGTCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCCGCTGGAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCATCAGA
Seq C2 exon
GAGCTGGTCGACATCCATACAAAGTTCCTGGACAAACTAAGGGAATCGCTGACGCCCAATGCCAAAGTGAAGATGGCCCAGGTGTTTCTCGACTTCCGCGAACCCTTCCTCATCTACGGCGAGTTCTGCTCCCTCCTGCTGGGCGCCATTGACTATTTGGCGGATGTGTGCAAGAAGAACCAGATCATCGATCAGCTGGTGCAGAAGTGCGAGCGGGACTACAATGTGGGCAAACTGCAGCTACGTGACATACTCTCAGTGCCCATGCAGCGCATTCTCAAGTACCATCTGCTGCTGGACAAGCTGGTGAAGGAGACATCGCCGCTGCACGACGATTACCGCTCGCTGGAGCGGGCCAAGGAGGCGATGATAGACGTGTCGCAATATATCAACGAGGTGAAACGCGACTCCGATCACCTGGTCATCATACAGAAGGTGAAGGACAGCATCTGCGATATTCATCTGCTGCAGAATGGCAACGGCAGCGATCTGCTGCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0040068_MULTIEX1-5/5=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(24.4=76.8)
C2:
PF0062115=RhoGEF=PD(74.4=47.3),PF154111=PH_10=WD(100=39.7)
Main Inclusion Isoform:
FBpp0112228

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0074448, FBpp0074449, FBpp0305901
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACAGGACGAGTAGAAGC
R:
TTTGCCCACATTGTAGTCCCG
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)