GgaEX1062971 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7068313-7071377:-
Coord C1 exon
chr17:7071275-7071377
Coord A exon
chr17:7069560-7069658
Coord C2 exon
chr17:7068313-7068381
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTTCACTTCCTCTAGAAA
3' ss Score
8.28
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGAGCACGATCTGGGGGAGGATATTTATGACTGCGTCCCCTGTGAAGATGAAGGCGATGATATCTACGAAGATATCATCCGGGTGGAAGTTCAGCAGCCCATG
Seq A exon
AAAATGGGCATGACAGAAGATGACAAAAGGAATTGCTGTTTGCTAGAAATCCAGGAGACGGAGGCCAAATACTACAAAACACTTGAAGACATAGAGAAG
Seq C2 exon
AACTATATGAACCCACTGAAGCTGGTACTGACCCCGCAAGACATGGAAGCGATCTTCATCAATTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGATCTGGGGGAGGATAT
R:
CTCCAAATTGATGAAGATCGCTT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]