HsaEX6063803 @ hg38
Exon Skipping
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133807258-133812216:-
Coord C1 exon
chr9:133812114-133812216
Coord A exon
chr9:133809040-133809138
Coord C2 exon
chr9:133807258-133807326
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTTCCCTCCTCTAGAAA
3' ss Score
11.36
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CGAGCATGACCTGGGGGAGGACATCTACGACTGCGTCCCGTGTGAGGATGGAGGGGACGACATCTACGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
AAAATGGGCATGACTGAAGATGACAAGAGGAACTGCTGCCTGCTGGAGATCCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
Seq C2 exon
AACTACATGAGCCCCCTGCGGCTGGTGCTGAGCCCGGCGGACATGGCAGCTGTCTTCATTAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293-'38-22,'38-21,41-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6),PF084296=PLU-1=PU(8.5=54.5)
C2:
PF0062115=RhoGEF=FE(12.6=100),PF084296=PLU-1=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCATGACCTGGGGGA
R:
AGGTTAATGAAGACAGCTGCCA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains