RnoEX0097868 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5843473-5847942:-
Coord C1 exon
chr3:5847840-5847942
Coord A exon
chr3:5845146-5845244
Coord C2 exon
chr3:5843473-5843541
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACAGGCCCTGTCTCCTCTAGAAA
3' ss Score
8.5
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
AAAATGGGACTAACCGAGGACGACAAGAGGAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
Seq C2 exon
AACTACATGGGTCCCTTGCGGCAGGTGCTGAGCCCCGTGGACATGGCCACCATCTTCATCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'13-12,'13-11,15-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGACCTGGGTGAGGA
R:
AGGTTGATGAAGATGGTGGCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]