DreEX6083954 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18025608-18032995:-
Coord C1 exon
chr21:18032890-18032995
Coord A exon
chr21:18029271-18029369
Coord C2 exon
chr21:18025608-18025676
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTCCCATAATAGAAA
3' ss Score
7.38
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGAGCATGATGTGGGAGAGGACGACATCTATGACTGCGTCCCCTGCGAGGATGATGGGGACGACATCTACGAGGACATCATCAAGGTGGAGGTTAGACAGCCTATG
Seq A exon
AAAATGGGCATGACTGAAGATGATAAGAGGAACTGCTGCTTGGTGGAAATTCAGGAGACTGAGGCAAAATACTACAAGACACTGGAGGACATTGAGAAG
Seq C2 exon
AATTACATGATCCCCTTGAAGCAAGTGTTAACACCACAGGAGATGGAGGCTATATTTGTAAATTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-'5-11,'5-10,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATGATGTGGGAGAGGA
R:
TTACAAATATAGCCTCCATCTCCTGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]