MmuEX0051276 @ mm10
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27297668-27300444:-
Coord C1 exon
chr2:27300430-27300444
Coord A exon
chr2:27299374-27299472
Coord C2 exon
chr2:27297668-27297736
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACGCGTCATGTCTCCTCTAGAAA
3' ss Score
8.61
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCAGATACATGCAG
Seq A exon
AAAATGGGCATGACTGAGGACGACAAGAGAAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
Seq C2 exon
AACTACATGGGTCCCTTGCGGCTGGTGCTGAGCCCGGCGGATATGGCTGCTGTCTTCATCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'33-14,'33-13,36-14=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types