BtaEX6047378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104684624-104689322:-
Coord C1 exon
chr11:104689221-104689322
Coord A exon
chr11:104686352-104686450
Coord C2 exon
chr11:104684624-104684692
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGTCCTGTGTCCTCCCCTAGAAA
3' ss Score
10.44
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGCACGGCGTGGGAGAGGACATCTATGACTGCGTCCCGTGCGAGGATGACGGGGACGACATCTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
AAAATGGGCATGACAGAGGATGACAAGAGAAACTGCTGCCTGCTGGAGATCCAGGAGACGGAGGCCAAGTACTACCGGACGCTGGAGGACATCGAGAAG
Seq C2 exon
AACTACGTGACGCCCCTGAGGCTGGTGCTCAGCCCGGTGGACATGGCGGCCATCTTCATCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-'2-5,'2-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACGGCGTGGGAGAG
R:
CCAGGTTGATGAAGATGGCCG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]