MmuEX0051276 @ mm9
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27153188-27157630:-
Coord C1 exon
chr2:27157528-27157630
Coord A exon
chr2:27154894-27154992
Coord C2 exon
chr2:27153188-27153256
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACGCGTCATGTCTCCTCTAGAAA
3' ss Score
8.61
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
AAAATGGGCATGACTGAGGACGACAAGAGAAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
Seq C2 exon
AACTACATGGGTCCCTTGCGGCTGGTGCTGAGCCCGGCGGATATGGCTGCTGTCTTCATCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'11-9,'11-8,13-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.5=60.6)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGACCTGGGTGAGGA
R:
CAGGTTGATGAAGACAGCAGC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: