RnoEX6038488 @ rn6
Exon Skipping
Gene
ENSRNOG00000050430 | Vav1
Description
vav guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:3951]
Coordinates
chr9:9641731-9645447:-
Coord C1 exon
chr9:9645339-9645447
Coord A exon
chr9:9645155-9645250
Coord C2 exon
chr9:9641731-9641799
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGTCCCTACTCACAGCCC
3' ss Score
7.88
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TGACACCGCAGAGGAAGATGAGGACCTTTATGACTGCGTGGAGAATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTCGGAGTCGGTGCCCACACCT
Seq A exon
CCCAAGATGACAGAGTACGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACTGAGGAGAAGTACACAGACACACTGGGCTCCATCCAGCAG
Seq C2 exon
CACTTCATGAAGCCCCTCCAGCGATTCCTCAAGCCTCAAGACATGGAGACCATCTTTGTCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050430-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=62.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCGCAGAGGAAGATGA
R:
TGTTGACAAAGATGGTCTCCATGT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]