MmuEX6078788 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57436472-57438263:+
Coord C1 exon
chr17:57436472-57436580
Coord A exon
chr17:57436669-57436764
Coord C2 exon
chr17:57438195-57438263
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTATGGTCTCTGCTCACAGCCC
3' ss Score
7.94
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGACACCGCAGAGGAAGACGAGGACCTTTATGACTGCGTGGAAAATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTTGGAGTCGGTGCCTACGCCA
Seq A exon
CCCAAGATGACAGAGTATGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACAGACACACTGGGCTCCATCCAGCAG
Seq C2 exon
CACTTCATGAAGCCTCTGCAGCGATTCCTTAAGCCTCAAGACATGGAGACCATCTTTGTCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=62.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAAGACGAGGACCTT
R:
ATGTTGACAAAGATGGTCTCCATGT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: