BtaEX6038621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039160 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12657]
Coordinates
chr7:18934028-18936037:-
Coord C1 exon
chr7:18935929-18936037
Coord A exon
chr7:18935742-18935837
Coord C2 exon
chr7:18934028-18934096
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTCCCCACTCTCAGCCC
3' ss Score
7.81
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
CGACACGGTGGAGGAGGATGAGGACCTGTACGACTGCGTGGAGAACGAGGAGGCAGAGGGCGACGAGGTCTACGAGGACCTCATGCGCTCGGAGCCGGTGCCCATGCCG
Seq A exon
CCCAAGATGACAGAGTATGACAAGCGGTGCTGCTGTCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACGGACACGCTGGGCTCCATCCAACAG
Seq C2 exon
CATTTTATGAAGCCCTTGCAGCGGTTCCTTAAACCCCAAGACGTCGAGATTATCTTCATCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039160-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=62.5)
C2:
PF0062115=RhoGEF=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGTGGAGGAGGATGAG
R:
ATGAAGATAATCTCGACGTCTTGGG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]