GgaEX1063002 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1081706-1084529:-
Coord C1 exon
chr8:1084421-1084529
Coord A exon
chr8:1081872-1081964
Coord C2 exon
chr8:1081706-1081774
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCATTGTAATTTCAGAAA
3' ss Score
5.5
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGAAACTGGTGTTGATGAAGATGAGGAGCTGTATGATTGTGTCTATGGAGAAGATGAAGGTGGGGAGGTTTATGAAGACCTAATGAAAGATGAAGCAGCACAGCAACCT
Seq A exon
AAACATACTGAAAATGATGTAAGAAGTTGTTGTCTTGCTGAAATAAAACAAACTGAAGAGAAATACACTGAAACTCTGGAATCAATAGAGAAA
Seq C2 exon
TTTTTTATGGTGCCATTGAAAAGGTTTATGTCAGCATCAGAGTTTGAAACTGTTTTCATCAACATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'5-9,'5-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=64.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGTGTTGATGAAGATGAGGA
R:
ACAGTTTCAAACTCTGATGCTGACA
Band lengths:
159-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]