HsaEX6032475 @ hg38
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107768441-107772843:-
Coord C1 exon
chr1:107772735-107772843
Coord A exon
chr1:107770636-107770728
Coord C2 exon
chr1:107768441-107768509
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTGATAATTCTAACTGCAGAAA
3' ss Score
6.08
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGAAACCCTTGTGGAAGATGAAGAAGATCTCTATGACTGTGTTTATGGGGAAGATGAAGGTGGAGAAGTCTATGAGGACTTAATGAAGGCAGAGGAAGCACATCAGCCC
Seq A exon
AAATGTCCAGAAAATGATATACGAAGTTGTTGTCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACTTTGGAGTCAATAGAAAAG
Seq C2 exon
TATTTCATGGCACCACTAAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-'28-19,'28-18,32-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(11.4=64.5)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
ENST00000527011fB29700
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCCTTGTGGAAGATGAAGA
R:
TGAATACTGAATCAAATTCTGCTGCT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains