BtaEX0039573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039160 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12657]
Coordinates
chr7:18935742-18936269:-
Coord C1 exon
chr7:18936204-18936269
Coord A exon
chr7:18935929-18936037
Coord C2 exon
chr7:18935742-18935837
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTGACTCCGCGTCCTGCAGCGA
3' ss Score
6.41
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
Exon sequences
Seq C1 exon
GCCCTTCCCCACTGAGGAGAGTGTGGGTGATGAAGACATCTACAGTGGCCTGTCCGACCAGATCGA
Seq A exon
CGACACGGTGGAGGAGGATGAGGACCTGTACGACTGCGTGGAGAACGAGGAGGCAGAGGGCGACGAGGTCTACGAGGACCTCATGCGCTCGGAGCCGGTGCCCATGCCG
Seq C2 exon
CCCAAGATGACAGAGTATGACAAGCGGTGCTGCTGTCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACGGACACGCTGGGCTCCATCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039160-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.419 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.4=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCCCCACTGAGGAG
R:
CTGTTGGATGGAGCCCAGC
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development