HsaEX6092358 @ hg19
Exon Skipping
Gene
ENSG00000141968 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12657]
Coordinates
chr19:6821802-6822525:+
Coord C1 exon
chr19:6821802-6821870
Coord A exon
chr19:6822232-6822340
Coord C2 exon
chr19:6822430-6822525
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTCACAACCCACAGCGA
3' ss Score
5.8
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
Exon sequences
Seq C1 exon
GCCCTTCCCCACCGAGGAGGAGAGTGTAGGTGATGAAGACATCTACAGTGGCCTGTCCGACCAGATCGA
Seq A exon
CGACACGGTGGAGGAGGATGAGGACCTGTATGACTGCGTGGAGAATGAGGAGGCGGAAGGCGACGAGATCTATGAGGACCTCATGCGCTCGGAGCCCGTGTCCATGCCG
Seq C2 exon
CCCAAGATGACAGAGTATGACAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACGGAGGAGAAGTACACTGACACGCTGGGCTCCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141968-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.324 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(8.3=37.8)
C2:
PF0062115=RhoGEF=PU(11.4=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGAGGAGGAGAGTGTAG
R:
CTGGATGGAGCCCAGCGT
Band lengths:
154-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)