RnoEX0097865 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5845146-5864288:-
Coord C1 exon
chr3:5864220-5864288
Coord A exon
chr3:5847840-5847942
Coord C2 exon
chr3:5845146-5845244
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACCGACCTCTCCCTGTGCAGCGA
3' ss Score
10.08
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCTTTTCCATCAGAGGAGACGGCTGAAAACGATGACGATGTCTACCGGAGTCTGGAAGAGCTGGCTGA
Seq A exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq C2 exon
AAAATGGGACTAACCGAGGACGACAAGAGGAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'11-11,'11-9,13-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Skipping Isoform:
ENSRNOT00000009893fB16296
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCATCAGAGGAGACGGCT
R:
TCTCAATGTCCTCCAGGGTGC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]