DreEX6084202 @ danRer10
Exon Skipping
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:21014982-21019086:-
Coord C1 exon
chr21:21018974-21019086
Coord A exon
chr21:21017329-21017553
Coord C2 exon
chr21:21014982-21015136
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACCGGCTGCTTGTTTGACAGGTT
3' ss Score
9.07
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CACACACCTGTCCCTTTGCCAAAGGAGTATGACGAGGACTCTCTAATCCCCAGTAGTCCTGCCACAGAGACCTCAGACAACGTTAGCCCAGTGGCCAGCCCCATCCACACTGG
Seq A exon
GTTTCTGGTCAGCTTCATGGTGGATGCGAGAGGCGGGTCAATGCGGGGCAGCAGACATAATGGTCTGCGTGTGATCATACCACCGCGCACCTGTGCTGCCCCGACACGCATCACCTGCCGTCTAGTCAAACCGCAGAAACTCACCACTCCTCCGCCTCTGGTGGAGGGAGAAGGACTCGCATCTCGTATTATCTCTCTAGGGCCTTCCAGCATGCAGTTTCTAGG
Seq C2 exon
GCCAGTGATAGTGGAGATCCCTCATTTTGCATCGCTGAGCCGAGGCGATCGGGAACTGGTGGTTCTGCGAAGTGAAAACGGCTCCGTATGGAAAGAGCACCGGAATCGCTATGGCGATGATGTTCTGGAGACCATCCTCAATGGAATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.171 C2=0.038
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.6)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCTGTCCCTTTGCCAAA
R:
GGTCTCCAGAACATCATCGCC
Band lengths:
244-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]