DreEX6089868 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:45003535-45020336:+
Coord C1 exon
chr10:45003535-45003590
Coord A exon
chr10:45010668-45010825
Coord C2 exon
chr10:45020249-45020336
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGTGTTATTTCTCCCTCCAGCTG
3' ss Score
9.26
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATCCTTCTCAGTGCCGCAGTATGAATGATATTTCCGTCACACCCAGCAGTGACCAG
Seq A exon
CTGAAGAATAAGTTCATGAAGAAGATCCCCAGAGATGCAGAGGCGTCCAATGTGCTCATCGGAGAGGTGGATTTCCTAGACAAGCCTTTCGTGGCGTTTGTTCGTCTGGCTCAAGCCGCTACACTAGGAGGCCTTACTGAAGTGCCAGTGCCAACCAG
Seq C2 exon
GTTTCTCTTTGTGCTCCTCGGTCCCAGCGGCAAAACCAAGTCCTACAATGAGATCGGTCGGGCAATGGCCACGCTCATGGTGGACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(7.1=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCAGTGCCGCAGTATG
R:
GTCGTCCACCATGAGCGTG
Band lengths:
142-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]