DreEX6090792 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10741834-10756047:-
Coord C1 exon
chr11:10755966-10756047
Coord A exon
chr11:10742046-10742189
Coord C2 exon
chr11:10741834-10741972
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATCTGTTTGTCCCTGACAGGCC
3' ss Score
10.2
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AGACAGGATGAGGAAGCTGTGCTGGACAGAGGTGGGACTCGGTCTATGCTCAACACCAATTTTGAGAAAGAGGAGCTAGAAG
Seq A exon
GCCATCGTACCCTCTACATTGGTGTTCATGTACCTCTGGGTCGGAGATCACACAGACGGCATCGCCATCATGGACATCGCCACAGGAAGAGGTCACGAGAAAGGGACTCTGGAACAGAGGATGGCAGAGAATCACCTTCATACA
Seq C2 exon
CGGACACACCGTCTCAGCGTGTGCAGTTCCTGCTGGGAATGGAGGATGATGAGGAACACATTCCACACGCTCTTTTCACAGAACTGGACGAGATCTGCCTGAAGGAGGGAGAGGATGCAGAGTGGAAAGAGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.837 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGATGAGGAAGCTGTGC
R:
CTGGCCGTCTCTTTCCACTCT
Band lengths:
220-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]