DreEX6092756 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35657610-35663509:-
Coord C1 exon
chr11:35663384-35663509
Coord A exon
chr11:35661675-35661875
Coord C2 exon
chr11:35657610-35657861
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTATGTGTTTGTTCTTCAGATC
3' ss Score
10.51
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGAGGACGTCCGAATGCAAGAGATCATGAAACTGGCTCATGAGTTTCTTCAGAACTTCTGCGCAGGGAACCAGCAAAACCAGGCTCTGCTCCACAAACACATCAACCTGTTTCTCAACCCCGGG
Seq A exon
ATCCTGGAGGCAATCACCATGCAGCACATATTCATGAACAACTTCCAGCTATGCAGTGAGATGAACGAACGTGTCGTGCAGCACTTTGTTCACTGCATCGAGACCCATGGCCGACACGTCCAGTACCTGAAGTTCCTGCAGACCATCGTCAAGGCAGAGAACAAATTCATCAAGAAGTGCCAGGACATTGTGATGGCCGAG
Seq C2 exon
CTAGTGAACTCGGGCGAGGATGTGTTGGTGTTTTACAATGACCGGGCCTCCTTCCAGACATTGGTCCAGATGATGCGTTCGGAGCGCGACCGGATGGATGAAAACAGCCCTCTCATGTACCACATCCATCTGGTGGAGCTTCTGGCCGTCTGCACTGAGGGCAAAAACGTCTACACTGAGATCAAGTGCAACTCTTTGCTGCCGCTAGATGATATTGTTCGTGTGGTCACACACAAAGACTGCATCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'33-32,'33-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(22.8=100)
A:
PF0136516=RYDR_ITPR=FE(36.7=100)
C2:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGTCCGAATGCAAGAG
R:
CGTTTTTGCCCTCAGTGCAGA
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]