RnoEX6014530 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140432297-140436704:+
Coord C1 exon
chr4:140432297-140432422
Coord A exon
chr4:140434443-140434643
Coord C2 exon
chr4:140436453-140436704
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTTGTCTCATGCCAGATC
3' ss Score
9.41
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
GCCGAAGATACCAAGATGCAGGAGATCATGAGGCTGGCTCACGAATTTCTGCAGAATTTCTGCGCAGGCAACCAGCAGAACCAAGCTTTGCTACATAAACACATAAACCTGTTTCTCAACCCAGGG
Seq A exon
ATCCTGGAAGCAGTGACCATGCAGCACATCTTCATGAACAACTTCCAGCTGTGCAGTGAGATCAACGAGAGAGTGGTCCAGCATTTCGTTCACTGCATAGAGACCCACGGTCGAAATGTCCAGTATATCAAGTTTCTCCAGACTATTGTCAAGGCCGAAGGGAAATTCATTAAAAAGTGCCAAGACATGGTCATGGCTGAG
Seq C2 exon
CTTGTCAATTCTGGAGAGGACGTCCTCGTGTTCTACAATGACAGAGCCTCTTTCCAGACTCTGATCCAGATGATGCGGTCCGAGCGTGACCGGATGGATGAGAACAGCCCTCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCTGTGTGCACAGAGGGCAAGAATGTGTACACAGAGATCAAGTGCAACTCCCTGCTCCCGCTCGATGACATCGTTCGTGTGGTCACTCATGAAGACTGTATCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(22.8=100)
A:
PF0136516=RYDR_ITPR=FE(36.7=100)
C2:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGGCTGGCTCACGAATT
R:
GCAGGGAGTTGCACTTGATCT
Band lengths:
299-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]