Special

GgaEX1030871 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18452788-18455209:+
Coord C1 exon
chr12:18452788-18452913
Coord A exon
chr12:18453283-18453483
Coord C2 exon
chr12:18454958-18455209
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTTTTATTCCTCTCATTAGATT
3' ss Score
8.66
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCTGAAGACACGAGGATGCAGGAGATAATGAAGCTTGCACATGAGTTTTTACAGAACTTTTGTGCTGGGAACCAACAGAACCAGGCATTGCTGCACAAGCACATAAACCTGTTCCTTAACCCAGGG
Seq A exon
ATTCTGGAAGCAGTAACAATGCAGCACATTTTCATGAACAACTTCCAGCTTTGCAGTGAGATTAATGAACGCGTTGTTCAACACTTTGTCCACTGTATAGAAACACATGGCAGAAATGTTCAGTACATAAAGTTCCTGCAGACAATTGTCAAGGCGGAAGGAAAATTCATTAAGAAATGCCAAGATATGGTAATGGCTGAG
Seq C2 exon
CTGGTGAATGCGGGAGAAGACGTCCTGGTGTTTTACAATGACAGAGCCTCCTTCCAGACTTTGGTGCAGATGATGAGATCAGAGAGGGATCGGATGGATGAGAACAGCCCGCTGATGTACCACATCCACTTGGTAGAACTGCTTGCTGTGTGCACAGAAGGCAAGAATGTCTACACAGAAATAAAATGCAACTCCCTCCTTCCTCTGGATGACATTGTTAGAGTAGTAACCCATGAGGATTGCATACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-8/24=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(22.8=100)
A:
PF0136516=RYDR_ITPR=FE(36.7=100)
C2:
PF0136516=RYDR_ITPR=PD(11.1=23.8)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGACACGAGGATGCAGG
R:
TTCTTGCCTTCTGTGCACACA
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]