Special

GgaEX1030871 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19096424-19098845:+
Coord C1 exon
chr12:19096424-19096549
Coord A exon
chr12:19096919-19097119
Coord C2 exon
chr12:19098594-19098845
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTTTTATTCCTCTCATTAGATT
3' ss Score
8.66
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCTGAAGACACGAGGATGCAGGAGATAATGAAGCTTGCACATGAGTTTTTACAGAACTTTTGTGCTGGGAACCAACAGAACCAGGCATTGCTGCACAAGCACATAAACCTGTTCCTTAACCCAGGG
Seq A exon
ATTCTGGAAGCAGTAACAATGCAGCACATTTTCATGAACAACTTCCAGCTTTGCAGTGAGATTAATGAACGCGTTGTTCAACACTTTGTCCACTGTATAGAAACACATGGCAGAAATGTTCAGTACATAAAGTTCCTGCAGACAATTGTCAAGGCGGAAGGAAAATTCATTAAGAAATGCCAAGATATGGTAATGGCTGAG
Seq C2 exon
CTGGTGAATGCGGGAGAAGACGTCCTGGTGTTTTACAATGACAGAGCCTCCTTCCAGACTTTGGTGCAGATGATGAGATCAGAGAGGGATCGGATGGATGAGAACAGCCCGCTGATGTACCACATCCACTTGGTAGAACTGCTTGCTGTGTGCACAGAAGGCAAGAATGTCTACACAGAAATAAAATGCAACTCCCTCCTTCCTCTGGATGACATTGTTAGAGTAGTAACCCATGAGGATTGCATACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'32-36,'32-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(22.8=100)
A:
PF0136516=RYDR_ITPR=FE(36.7=100)
C2:
PF0136516=RYDR_ITPR=PD(11.1=23.8)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGACACGAGGATGCAGG
R:
TTCTTGCCTTCTGTGCACACA
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]