DreEX6092877 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36486037-36494685:-
Coord C1 exon
chr11:36494569-36494685
Coord A exon
chr11:36492305-36492364
Coord C2 exon
chr11:36486037-36486199
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCATTCATATGTAGAGG
3' ss Score
6.51
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAATACAAGGAGTATGAGAAGTCGGTGCGAATTGAGGAGATCGACGGCGCAAAATTGGTGAAAAATCTGGCGCAGAACATGGAGGAGATGTTTCGGAAAAAAGCGGAGGCCACACGA
Seq A exon
AGGCTCGTCGAAGCGGCAGAAGAAGCTCATCTTCAGCATGAAGAAAACCCAGACCTACAG
Seq C2 exon
TATGAGTATTTCAACGCAGTGCTGATAAACGAGGTGGATGAGGATGGGAATAGCGTGGAGCTGGGAGGAGAGTTTCTCCTGGAACCCAACGATCATTTTAATAACCTATCCGTCAACCTCAGCCTCAGCGTGGTGCAGGTGCCAACCAACATGTACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.7=75.0)
C2:
PF083996=VWA_N=FE(45.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAAAATCTGGCGCAGA
R:
AGAAACTCTCCTCCCAGCTCC
Band lengths:
139-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]