RnoEX0016141 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5465924-5604872:-
Coord C1 exon
chr16:5604756-5604872
Coord A exon
chr16:5538361-5538420
Coord C2 exon
chr16:5465924-5466086
Length
60 bp
Sequences
Splice sites
3' ss Seq
GACTGCCTTCTGTTTTCCAGCGT
3' ss Score
8.45
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AAATACAAAGAGTATGAGAAAGACGTTGCCATTGAAGAAATCGACGGTCTCCAACTGGTGAAAAAGCTGGCCAAGAACATGGAAGAGATGTTTCACAAGAAGTCCGAGGCAGTGCGG
Seq A exon
CGTCTCGTGGAGGCTGCAGAGGAAGCACACCTGAAGCATGAATTTGACGCCGACTTGCAG
Seq C2 exon
TATGAATACTTCAATGCCGTGCTGATCAACGAGAGAGACAAAGATGGGAACTTTTTGGAATTGGGAAAGGAGTTCATCTTGGCCCCCAATGACCATTTTAATAATTTGCCTGTGAACATCAGTCTGAGTGATGTCCAAGTGCCAACGAACATGTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGCCAAGAACATGGAAG
R:
GGGGCCAAGATGAACTCCTTT
Band lengths:
139-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]