GgaEX1012524 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7399474-7476094:+
Coord C1 exon
chr12:7399474-7399590
Coord A exon
chr12:7438575-7438634
Coord C2 exon
chr12:7475932-7476094
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTTTTTCCAGCGT
3' ss Score
11.27
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAATACAAAGAATATGAGAAAGACGTTGCAATAGAAGAAATTGATGGCCTTCAGCTTGTGAAAAAGTTAGCGAAGAATATGGAAGAAATGTTTCATAAGAAGTCCGAAGCTGTGCGG
Seq A exon
CGTCTTGTTGAGGCTGCAGAAGATGCTTATCTGAAACATGAGTTTGATGCTGATTTGCAG
Seq C2 exon
TATGAGTACTTCAATGCTGTGCTTATAAATGAAAGAGATGAAGAAGGGAACTATCTGGAGCTGGGAAAGGAGTTCATTCTAGTGCCGAACGACCACTTCAATAACTTGCCTGTAAATATCAGTCTGAGTGATGTCCAAGTACCAACTAATATGTATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'6-6,'6-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCCTTCAGCTTGTGAA
R:
CCCAGCTCCAGATAGTTCCCT
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]