MmuEX6040203 @ mm9
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:30209607-30347783:-
Coord C1 exon
chr14:30347667-30347783
Coord A exon
chr14:30281083-30281142
Coord C2 exon
chr14:30209607-30209769
Length
60 bp
Sequences
Splice sites
3' ss Seq
TATTACCTTCTGTTTTCCAGCGT
3' ss Score
8.47
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AAATACAAAGAGTATGAGAAGGACGTTGCCATTGAAGAAATCGACGGTCTCCAACTGGTGAAGAAGTTGGCTAAAATCATGGAGGAGATGTTCCACAAGAAGTCCGAGGCAGTGAGG
Seq A exon
CGTCTTGTGGAGGCTGCAGAGGAGGCACACCTGAAACATGAATTTGATGCTGACTTGCAG
Seq C2 exon
TATGAATACTTCAATGCTGTGCTGATCAACGAGAGGGACAAAGACGGGAACTTTTTGGAATTGGGAAAGGAATTCATCTTAGCCCCCAATGACCATTTTAATAATTTGCCTGTGAACATCAGTCTGAGTGATGTGCAAGTGCCAACGAACATGTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGACGGTCTCCAACTGG
R:
AGTTCCCGTCTTTGTCCCTCT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: