DreEX6094734 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20288002-20290753:-
Coord C1 exon
chr24:20290548-20290753
Coord A exon
chr24:20288206-20288284
Coord C2 exon
chr24:20288002-20288100
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGGGTTTTTTCACAGGGT
3' ss Score
8.05
5' ss Seq
TCTGTGAGA
5' ss Score
1.76
Exon sequences
Seq C1 exon
GCTGTTATGTTGGCTCAGGACATCAGGGACCGAGAGAGAGGAGGACGGGCTCAGATTGGCGTGATTGAGGGTGCACAGGAGGAAGCTTCTCCTGAGCTAATGAAGGTCATGGTCTCGGTTTTGGGTCAGAGGATTGGTCAAATGAAAGAGGCAATACCTGATGACAAACCAGGCCAAAACCAGATCTCCAATGTCAAACTCTACCA
Seq A exon
GGTGTCAGACGCCAGTGGTCAGCTGTTGGTACAGGAAGTGGCTGTCAGTCCACTCACCCAGGATCTGCTGTGCTCCTCT
Seq C2 exon
GATTGCTATATTTTAGATCAAGGTGGCACCTCGATAATGGTCTGGAAGGGAAAAGGAGCTTCAAATGAAGAGAGGCGCTCGGCGATGGGCCGGGCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.5=43.5)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACAGGAGGAAGCTTCTC
R:
GACCATTATCGAGGTGCCACC
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]