RnoEX6038130 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127743615-127744424:+
Coord C1 exon
chr8:127743615-127743814
Coord A exon
chr8:127744163-127744241
Coord C2 exon
chr8:127744326-127744424
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTGCATACCTGCCCCACAGTGT
3' ss Score
7.47
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCGCTGAGCCTGACTTGCAGCCTCAGAGACAGAGAGCGTGGTGGCCGTGCCCAGATCCGTGTGGTGGATGCTGAGAATAAAGCCACCGACCTCATGAGCATCATGGAGGCTGTGCTGGGCAGAAGATCGGGCAGCCTGTGTGCCTCTGTGCCCAGCAACAGTGTTAGCCAGCTGCAAAAGGCCAACATCCGTCTCTACCA
Seq A exon
TGTCTTCGAGAAGGGAACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTGCTGCAGGAGGAT
Seq C2 exon
GGCTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCGAGGAGAGGAAGGCTGCCTTCAGCAGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGTGGATGCTGAGAAT
R:
AGATCTTGAAGCCACCCTGGT
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]